PROJECT NAME
GOLD Project ID
Gp0009768  
Project Name
Jatropha curcas Palawan  
Other Names
  
Legacy ER Project ID
18616  
Legacy ER ID
18616  
Legacy GOLD ID
Gi08702  
NCBI BioProject Name Jatropha curcas Palawan
NCBI BioProject ID 52543
NCBI BioProject Accession
PRJDA52543  
NCBI Locus Tag
EMK  
NCBI Biosample ID
PI Kiichi Fukui
Added By Ioanna Pagani on 2010-12-27
Last Modified By Nikos Kyrpides on 2011-04-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Agricultural
Biofuels
Biotechnological
Sequencing Center Kazusa DNA Research Institute (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Jatropha curcas Palawan Genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications DNA research : an international journal for rapid publication of reports on genes and genomes 18(1):65-76 "Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L."
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Jatropha curcas Palawan
Biosamples Jatropha curcas Palawan
Analysis Projects Jatropha curcas Palawan
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
89.5x  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Jatropha curcas Palawan
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Jatropha  
Genus Synonyms
  
Species
curcas  
Species Synonyms
  
Strain
Palawan  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 180498
NCBI Kingdom
Eukaryota  
NCBI Phylum
Streptophyta  
NCBI Class
  
NCBI Order
Malpighiales  
NCBI Family
Euphorbiaceae  
NCBI Genus
Jatropha  
NCBI Species
Jatropha curcas  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources