PROJECT NAME
GOLD Project ID
Gp0009748  
Project Name
Spermophilus tridecemlineatus  
Other Names
  
Legacy ER Project ID
18611  
Legacy ER ID
18611  
Legacy GOLD ID
Gi08696  
NCBI BioProject Name Spermophilus tridecemlineatus
NCBI BioProject ID 61725
NCBI BioProject Accession
PRJNA61725  
NCBI Locus Tag
G1A  
NCBI Biosample ID SAMN00210855
PI
  
Added By Ioanna Pagani on 2011-01-27
Last Modified By Ioanna Pagani on 2011-01-27
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance
  
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH-NHGRI (USA)
Project Description
Spermophilus tridecemlineatus genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Spermophilus tridecemlineatus
Biosamples Spermophilus tridecemlineatus
Analysis Projects Spermophilus tridecemlineatus
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Illumina HiSeq
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
495.1x  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Spermophilus tridecemlineatus
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Spermophilus  
Genus Synonyms
  
Species
tridecemlineatus  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 43179
NCBI Kingdom
Eukaryota  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Rodentia  
NCBI Family
Sciuridae  
NCBI Genus
Spermophilus  
NCBI Species
Spermophilus tridecemlineatus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources