PROJECT NAME
GOLD Project ID
Gp0000953  
Project Name
Arthrobacter phenanthrenivorans Sphe3  
Other Names
Arthrobacter phenanthrenivorans Sphe3  
Legacy ER Project ID
10845  
Legacy ER ID
10845  
Legacy GOLD ID
Gi01675, Gc01621  
NCBI BioProject Name Arthrobacter phenanthrenivorans
NCBI BioProject ID 20087
NCBI BioProject Accession
PRJNA20087  
NCBI Locus Tag
Asphe3  
NCBI Biosample ID SAMN00710681
PI Kyrpides N
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance Bioremediation
Biotechnological
Environmental
Sequencing Center DOE Joint Genome Institute (USA)
Collaborating Institute Univ of Ioannina (Greece)
Funding Agency DOE (USA)
Project Description
Phenanthrene-degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information MicrobeWiki
Isolation
Database
  
Genome Publications Standards in genomic sciences 4(2):123-30 Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies DD_Kyrpides
Biosamples Arthrobacter phenanthrenivorans Sphe3
Analysis Projects Arthrobacter phenanthrenivorans Sphe3
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology 454
Sanger
Library Method
  
Number Of Reads
44113 Sanger, 599557 pyrosequencing.  
Read Size
  
Sequencing Depth
9.33x Sanger, 17.45x pyrosequence  
Vector
  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
Organism Name Arthrobacter phenanthrenivorans Sphe3
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Arthrobacter  
Genus Synonyms
  
Species
phenanthrenivorans  
Species Synonyms
  
Strain
Sphe3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 18606  
Type Strain
  
Exemplar DOI
10.1601/ex.13221  
Exemplar Name
Arthrobacter phenanthrenivorans  
Taxon DOI
10.1601/tx.13221  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 361575
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Micrococcaceae  
NCBI Genus
Arthrobacter  
NCBI Species
Arthrobacter phenanthrenivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms PAH-degrading
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types