PROJECT NAME
GOLD Project ID
Gp0000927  
Project Name
Agreia sp. PHSC20C1  
Other Names
  
Legacy ER Project ID
10818  
Legacy ER ID
10818  
Legacy GOLD ID
Gi00832  
NCBI BioProject Name marine actinobacterium PHSC20C1
NCBI BioProject ID 13373
NCBI BioProject Accession
PRJNA13373  
NCBI Locus Tag
A  
NCBI Biosample ID SAMN02436159
PI
  
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Cluster matches most closely with isolates and environmental sequences from high latitude (both Arctic and Antarctic) environments; important in remineralization of highly recalcitrant carbon. Relatives above 98% sequence identity to this strain have been reported from seawater, sea ice, and ice melt water.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Isolation
Information
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Agreia sp. PHSC20C1
Biosamples Agreia sp. PHSC20C1
Analysis Projects Agreia sp. PHSC20C1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Agreia sp. PHSC20C1
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Agreia  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
PHSC20C1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 312284
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
marine actinobacterium PHSC20C1  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
Psychrophile  
Temperature Optimum
20  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes
  
Energy Sources