PROJECT NAME
GOLD Project ID
Gp0000882  
Project Name
Subdoligranulum variabile DSM 15176  
Other Names
  
Legacy ER Project ID
10771  
Legacy ER ID
10771  
Legacy GOLD ID
Gi01708  
NCBI BioProject Name Subdoligranulum variabile DSM 15176
NCBI BioProject ID 18181
NCBI BioProject Accession
PRJNA18181  
NCBI Locus Tag
SUBVAR  
NCBI Biosample ID SAMN00008862
PI Human Gut Community Users
Added By Heather Creasy on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Gut Microbiome Initiative (HGMI)
Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Subdoligranulum variabile DSM 15176
Analysis Projects Subdoligranulum variabile DSM 15176
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
23.9x  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Subdoligranulum variabile DSM 15176
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Subdoligranulum  
Genus Synonyms
  
Species
variabile  
Species Synonyms
  
Strain
DSM 15176  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15176  
Type Strain
  
Exemplar DOI
10.1601/ex.8946  
Exemplar Name
Subdoligranulum variabile  
Taxon DOI
10.1601/tx.8946  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 411471
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Ruminococcaceae  
NCBI Genus
Subdoligranulum  
NCBI Species
Subdoligranulum variabile  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ518869
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Pleomorphic-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Feces
Gastrointestinal tract
Host
Human intestinal microflora
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources
  
HMP METADATA
HMP ID
858  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-06-17  
Date Sequencing Begins
2008-07-17  
Date Draft Sequencing Completed
2008-12-05  
Cross Reference ID