PROJECT NAME
GOLD Project ID
Gp0008285  
Project Name
Streptococcus pneumoniae SPN072838  
Other Names
  
Legacy ER Project ID
17570  
Legacy ER ID
17570  
Legacy GOLD ID
Gi07382  
NCBI BioProject Name Streptococcus pneumoniae SPN072838
NCBI BioProject ID 50797
NCBI BioProject Accession
PRJNA50797  
NCBI Locus Tag
SPN072838  
NCBI Biosample ID
PI Donati,C.
Added By Ioanna Pagani on 2010-07-29
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Pathogen
Medical
Sequencing Center
  
Collaborating Institute Sanger Institute (United Kingdom)
Funding Agency
  
Project Description
Streptococcus pneumoniae SPN072838 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Disease
Database
  
Genome Publications PLoS genetics 9(10):e1003868 Dominant role of nucleotide substitution in the diversification of serotype 3 pneumococci over decades and during a single infection.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Streptococcus pneumoniae SPN strains, WTSI
Biosamples Streptococcus pneumoniae SPN072838
Analysis Projects Streptococcus pneumoniae SPN072838
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Streptococcus pneumoniae SPN072838
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Streptococcus  
Genus Synonyms
  
Species
pneumoniae  
Species Synonyms
  
Strain
SPN072838  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 869305
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Streptococcaceae  
NCBI Genus
Streptococcus  
NCBI Species
Streptococcus pneumoniae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Diseases Pneumonia
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources