PROJECT NAME
GOLD Project ID
Gp0008124  
Project Name
Drosophila pseudoobscura  
Other Names
  
Legacy ER Project ID
17661  
Legacy ER ID
17661  
Legacy GOLD ID
Gi07473  
NCBI BioProject Name Drosophila pseudoobscura
NCBI BioProject ID 13195
NCBI BioProject Accession
PRJNA13195  
NCBI Locus Tag
  
NCBI Biosample ID
PI
  
Added By Ioanna Pagani on 2010-07-30
Last Modified By Jakob Jansson on 2010-12-16
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance
  
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute J. Craig Venter Institute (USA)
Funding Agency
  
Project Description
The Institute for Genomic Research (TIGR) generated an assembly of the Drosophila pseudoobscura genome using trace data available in the NCBI Trace Archive. The sequence data was generated by the Baylor College of Medicine whole genome shotgun (WGS) sequencing project. The TIGR Drosophila pseudoobscura assembly project has the WGS project accession AAFS00000000. This version of the project (01) has the accession number AAFS01000000, and consists of sequences AAFS01000001-AAFS01012430. The contigs scaffolds are provided as CON records with numbers CH396049-CH398080.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Drosophila pseudoobscura
Biosamples Drosophila pseudoobscura
Analysis Projects Drosophila pseudoobscura
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Drosophila pseudoobscura
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
ARTHROPODA  
Genus
Drosophila  
Genus Synonyms
  
Species
pseudoobscura  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 7237
NCBI Kingdom
Eukaryota  
NCBI Phylum
Arthropoda  
NCBI Class
Insecta  
NCBI Order
Diptera  
NCBI Family
Drosophilidae  
NCBI Genus
Drosophila  
NCBI Species
Drosophila pseudoobscura  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources