PROJECT NAME
GOLD Project ID
Gp0000655  
Project Name
Rickettsia sibirica 246  
Other Names
  
Legacy ER Project ID
10565  
Legacy ER ID
10565  
Legacy GOLD ID
Gc00121, Gi10745  
NCBI BioProject Name Rickettsia sibirica 246
NCBI BioProject ID 1414
NCBI BioProject Accession
PRJNA1414  
NCBI Locus Tag
RSIB  
NCBI Biosample ID SAMN02393728
PI Malek JA
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Pathogen
Medical
Sequencing Center Agencourt Bioscience (USA)
Collaborating Institute CDC (USA)
Funding Agency NIH-NIAID (USA)
Project Description
Obligate intracellular pathogen that causes North Asian tick typhus  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications Nucleic acids research Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Rickettsia sibirica 246
Biosamples Rickettsia sibirica 246
Analysis Projects Rickettsia sibirica 246
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
35298  
Read Size
  
Sequencing Depth
15.8x  
Vector
pACλcI32 and pBRstar modified by re-introducing the NotI site followed by a BstXI restriction site, XhoI restriction site plus three frame stop codons.  
GC Percent
32  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
Organism Name Rickettsia sibirica 246
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rickettsia  
Genus Synonyms
  
Species
sibirica  
Species Synonyms
  
Strain
246  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC VR-151  
Type Strain
  
Exemplar DOI
10.1601/ex.972  
Exemplar Name
Rickettsia sibirica  
Taxon DOI
10.1601/tx.972  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 272951
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rickettsiales  
NCBI Family
Rickettsiaceae  
NCBI Genus
Rickettsia  
NCBI Species
Rickettsia sibirica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Insecta  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 621684
Genbank 16S ID D38628
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Symbiotic  
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases North Asian tick typhus
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types