PROJECT NAME
GOLD Project ID
Gp0006474  
Project Name
Xenopus tropicalis  
Other Names
Xenopus tropicalis  
Legacy ER Project ID
12979  
Legacy ER ID
12979  
Legacy GOLD ID
Gc01266, Gi12066  
NCBI BioProject Name Xenopus (Silurana) tropicalis
NCBI BioProject ID 12348
NCBI BioProject Accession
PRJNA12348  
NCBI Locus Tag
XENTR  
NCBI Biosample ID SAMN00000117
PI Daniel Rokhsar
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Nikos Kyrpides on 2012-01-13
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (USA)
Collaborating Institute
  
Funding Agency DOE (USA)
Project Description
Xenopus tropicalis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Sequencing of Frogs
Froguts
Consortium
Database
  
Genome Publications "Science (New York, N.Y.)" 328(5978):633-6 The genome of the Western clawed frog Xenopus tropicalis.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Xenopus tropicalis main
Biosamples Xenopus tropicalis
Analysis Projects Xenopus tropicalis
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
CHORI-216 Nigerian frog Xenopus tropicalis BAC library,CHORI-216 Nigerian frog Xenopus tropicalis BAC library  
Number Of Reads
  
Read Size
  
Sequencing Depth
7.65x  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Xenopus tropicalis
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Xenopus  
Genus Synonyms
  
Species
tropicalis  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 8364
NCBI Kingdom
Eukaryota  
NCBI Phylum
Chordata  
NCBI Class
Amphibia  
NCBI Order
Anura  
NCBI Family
Pipidae  
NCBI Genus
Xenopus  
NCBI Species
Xenopus (Silurana) tropicalis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources