PROJECT NAME
GOLD Project ID
Gp0006290  
Project Name
Selenomonas infelix ATCC 43532  
Other Names
  
Legacy ER Project ID
15836  
Legacy ER ID
15836  
Legacy GOLD ID
Gi05257  
NCBI BioProject Name Selenomonas infelix ATCC 43532
NCBI BioProject ID 40695
NCBI BioProject Accession
PRJNA40695  
NCBI Locus Tag
HMPREF9334  
NCBI Biosample ID SAMN02463814
PI Birren, B
Added By Nikos Kyrpides on 2009-09-14
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference Genome for Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Selenomonas infelix ATCC 43532
Analysis Projects Selenomonas infelix ATCC 43532
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
38x  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Selenomonas infelix ATCC 43532
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Selenomonas  
Genus Synonyms
  
Species
infelix  
Species Synonyms
  
Strain
ATCC 43532  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 43532  
Type Strain
  
Exemplar DOI
10.1601/ex.4427  
Exemplar Name
Selenomonas infelix  
Taxon DOI
10.1601/tx.4427  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 679201
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Selenomonadales  
NCBI Family
Veillonellaceae  
NCBI Genus
Selenomonas  
NCBI Species
Selenomonas infelix  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF287802
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Crescent-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9334  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
5. annotation (and sequence) submitted to NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Subgingival  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2009-12-16  
Date Sequencing Begins
2009-12-16  
Date Draft Sequencing Completed
2010-03-15  
Cross Reference ID
HOMD: tax_639