PROJECT NAME
GOLD Project ID
Gp0006217  
Project Name
Hydrogenivirga sp. 128-5-R1-1  
Other Names
  
Legacy ER Project ID
11155  
Legacy ER ID
11155  
Legacy GOLD ID
Gi01416  
NCBI BioProject Name Hydrogenivirga sp. 128-5-R1-1
NCBI BioProject ID 19313
NCBI BioProject Accession
PRJNA19313  
NCBI Locus Tag
HG  
NCBI Biosample ID SAMN02436118
PI
  
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Tatiparthi B. Reddy on 2014-06-10
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
This genus has one other member, isolated from shallow marine sediments in Japan, and forms a lineage within the Aquificaceae. This is the first isolate from deep-sea vents. Nominated based on their novelty (Hydrogenivirga, Thermodesulfator), their importance and global distribution at vents (DHVE, Persephonellas, Desulfurobacteria, Epsilon Proteobacteria), their relatedness to other marine microbes with genome sequence information (Persephonellas), their uncertain phylogenetic and taxonomic affiliation (Desulfurobacterium) or unknown physiology (DHVE). All are thermophilic or mesophilic chemolithoautotrophs, or facultative heterotrophs. The DHVE are not isolates and are of unknown metabolism, but are likely thermophiles based on their association with other thermophiles.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Information
Aquificales Data Warehouse
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Hydrogenivirga sp. 128-5-R1-1
Biosamples Hydrogenivirga sp. 128-5-R1-1
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
44  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Hydrogenivirga sp. 128-5-R1-1
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Hydrogenivirga  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
128-5-R1-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 392423
NCBI Kingdom
Bacteria  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Aquificaceae  
NCBI Genus
Hydrogenivirga  
NCBI Species
Hydrogenivirga sp. 128-5-R1-1  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Deep sea
Fresh water
Hot spring
Hydrothermal vent
Metabolisms Hydrogen oxidizer
Sulfur oxidizer
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types