PROJECT NAME
GOLD Project ID
Gp0006178  
Project Name
Labrenzia aggregata IAM 12614  
Other Names
  
Legacy ER Project ID
11204  
Legacy ER ID
11204  
Legacy GOLD ID
Gi01460  
NCBI BioProject Name Labrenzia aggregata IAM 12614
NCBI BioProject ID 18315
NCBI BioProject Accession
PRJNA18315  
NCBI Locus Tag
SIAM  
NCBI Biosample ID SAMN02436089
PI
  
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
ubiquitous carbon monoide oxidizing bacterium associated with marine invertebrates, marine algae and macrophytes, water column and sediments; metabolizes aromatic compounds; produces toxins  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Labrenzia aggregata IAM 12614
Biosamples Labrenzia aggregata IAM 12614
Analysis Projects Labrenzia aggregata IAM 12614
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Labrenzia aggregata IAM 12614
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Labrenzia  
Genus Synonyms
Stappia  
Species
aggregata  
Species Synonyms
  
Strain
IAM 12614  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 25650  
Type Strain
  
Exemplar DOI
10.1601/ex.1157  
Exemplar Name
Labrenzia aggregata  
Taxon DOI
10.1601/tx.10792  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 384765
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Labrenzia  
NCBI Species
Labrenzia aggregata  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID D88520
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes
  
Energy Sources