PROJECT NAME
GOLD Project ID
Gp0000604  
Project Name
Caenorhabditis briggsae AF16  
Other Names
  
Legacy ER Project ID
10522  
Legacy ER ID
10522  
Legacy GOLD ID
Gc00164  
NCBI BioProject Name Caenorhabditis briggsae
NCBI BioProject ID 10731
NCBI BioProject Accession
PRJNA10731  
NCBI Locus Tag
  
NCBI Biosample ID
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Ioanna Pagani on 2011-01-27
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance
  
Sequencing Center Cold Spring Harbor Laboratory (International)
Louis, MO 63110, USA International (International)
Sanger Institute (International)
Washington University in St. Louis (International)
Collaborating Institute
  
Funding Agency NIH (International)
NSF (International)
Wellcome Trust (International)
Project Description
The genome of the Caenorhabditis briggsae was sequenced at the Sanger Institute  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications PLoS biology The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Caenorhabditis briggsae AF16
Biosamples Caenorhabditis briggsae AF16
Analysis Projects Caenorhabditis briggsae AF16
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
2-3kb, 4.0kb, 4.4 kb and 11kb inserts, fosmid and BAC libraries  
Number Of Reads
2068000  
Read Size
  
Sequencing Depth
16.5x  
Vector
pOT4, pUC18, pTrueBlue-rop, M13, plasmid vectors  
GC Percent
  
Chromosome Count
6  
Plasmid Count
0  
ORGANISM NAME
Organism Name Caenorhabditis briggsae AF16
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
NEMATODES  
Genus
Caenorhabditis  
Genus Synonyms
  
Species
briggsae  
Species Synonyms
  
Strain
AF16  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 6238
NCBI Kingdom
Eukaryota  
NCBI Phylum
Nematoda  
NCBI Class
Chromadorea  
NCBI Order
Rhabditida  
NCBI Family
Rhabditidae  
NCBI Genus
Caenorhabditis  
NCBI Species
Caenorhabditis briggsae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources