PROJECT NAME
GOLD Project ID
Gp0005917  
Project Name
Neisseria shayeganii 871  
Other Names
  
Legacy ER Project ID
16177  
Legacy ER ID
16177  
Legacy GOLD ID
Gi05602  
NCBI BioProject Name Neisseria shayeganii 871
NCBI BioProject ID 66915
NCBI BioProject Accession
PRJNA66915  
NCBI Locus Tag
HMPREF9371  
NCBI Biosample ID SAMN02299457
PI BCM-HGSC
Added By Konstantinos Liolios on 2009-11-18
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Neisseria shayeganii 871
Analysis Projects Neisseria shayeganii 871
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
294542  
Read Size
  
Sequencing Depth
42.2x  
Vector
  
GC Percent
58  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Neisseria shayeganii 871
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Neisseria  
Genus Synonyms
  
Species
shayeganii  
Species Synonyms
  
Strain
871  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 22246  
Type Strain
  
Exemplar DOI
10.1601/ex.20370  
Exemplar Name
Neisseria shayeganii  
Taxon DOI
10.1601/tx.20370  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1032488
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Neisseriales  
NCBI Family
Neisseriaceae  
NCBI Genus
Neisseria  
NCBI Species
Neisseria shayeganii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Pulmonary system  
Specific Ecosystem
Sputum  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Diseases None
Known Habitats Host
Human airways
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9371  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
5. annotation (and sequence) submitted to NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Airways  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2011-03-03  
Date Sequencing Begins
2011-03-23  
Date Draft Sequencing Completed
2011-05-05  
Cross Reference ID