PROJECT NAME
GOLD Project ID
Gp0005889  
Project Name
Peptoniphilus duerdenii ATCC BAA-1640  
Other Names
  
Legacy ER Project ID
15673  
Legacy ER ID
15673  
Legacy GOLD ID
Gi05118  
NCBI BioProject Name Peptoniphilus duerdenii ATCC BAA-1640
NCBI BioProject ID 50529
NCBI BioProject Accession
PRJNA50529  
NCBI Locus Tag
HMPREF9225  
NCBI Biosample ID SAMN00117215
Added By Nikos Kyrpides on 2009-09-03
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Peptoniphilus duerdenii ATCC BAA-1640
Analysis Projects Peptoniphilus duerdenii ATCC BAA-1640
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
244539  
Read Size
  
Sequencing Depth
36.2x  
Vector
  
GC Percent
34  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
Organism Name Peptoniphilus duerdenii ATCC BAA-1640
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Peptoniphilus  
Genus Synonyms
  
Species
duerdenii  
Species Synonyms
  
Strain
ATCC BAA-1640  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-1640  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 862517
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiales Family XI. Incertae Sedis  
NCBI Genus
Peptoniphilus  
NCBI Species
Peptoniphilus duerdenii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Human vaginal microflora
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9225  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Vaginal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2010-03-03  
Date Draft Sequencing Completed
2010-04-22  
Cross Reference ID