PROJECT NAME
GOLD Project ID
Gp0000584  
Project Name
Rattus norvegicus BN/SsNHsdMCW  
Other Names
  
Legacy ER Project ID
10505  
Legacy ER ID
10505  
Legacy GOLD ID
Gc00181, Gi0010505  
NCBI BioProject Name Rattus norvegicus
NCBI BioProject ID 10629
NCBI BioProject Accession
PRJNA10629  
NCBI Locus Tag
  
NCBI Biosample ID
PI Gibbs R
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Ioanna Pagani on 2010-09-13
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Model Organism
Sequencing Center BC Genome Sciences Center (USA)
Celera Genomics (USA)
J. Craig Venter Institute (USA)
Genome Therapeutics (USA)
Collaborating Institute Univ of Utah (USA)
Funding Agency NIH (USA)
Project Description
Genome sequencing by Rat Genome Sequencing Consortium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Wikipedia
Taxonomy
Database
  
Genome Publications Nature Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Rattus norvegicus BN/SsNHsdMCW
Biosamples Rattus norvegicus BN/SsNHsdMCW
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
3x BAC; 6x WGS ABI Sanger reads  
Vector
  
GC Percent
42  
Chromosome Count
21  
Plasmid Count
0  
ORGANISM NAME
Organism Name Rattus norvegicus BN/SsNHsdMCW
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Rattus  
Genus Synonyms
  
Species
norvegicus  
Species Synonyms
  
Strain
BN/SsNHsdMCW  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 10116
NCBI Kingdom
Eukaryota  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Rodentia  
NCBI Family
Muridae  
NCBI Genus
Rattus  
NCBI Species
Rattus norvegicus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources