PROJECT NAME
GOLD Project ID
Gp0000577  
Project Name
Phanerochaete chrysosporium RP-78  
Other Names
  
Legacy ER Project ID
10499  
Legacy ER ID
10499  
Legacy GOLD ID
Gc00187, Gi0010499  
NCBI BioProject Name Phanerochaete chrysosporium RP-78
NCBI BioProject ID 135
NCBI BioProject Accession
PRJNA135  
NCBI Locus Tag
  
NCBI Biosample ID
PI Daniel Rokhsar
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Ioanna Pagani on 2010-09-13
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Biotechnological
Environmental
Sequencing Center DOE Joint Genome Institute (USA)
Collaborating Institute
  
Funding Agency DOE (USA)
Project Description
WGS sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Nature biotechnology Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Phanerochaete chrysosporium RP-78
Biosamples Phanerochaete chrysosporium RP-78
Analysis Projects Phanerochaete chrysosporium RP-78
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
3-4kb inserts and cosmid libraries  
Number Of Reads
  
Read Size
  
Sequencing Depth
12x  
Vector
pUC18, pWE15  
GC Percent
57  
Chromosome Count
10  
Plasmid Count
0  
ORGANISM NAME
Organism Name Phanerochaete chrysosporium RP-78
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Phanerochaete  
Genus Synonyms
  
Species
chrysosporium  
Species Synonyms
  
Strain
RP-78  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
FGSC 9002  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 273507
NCBI Kingdom
Eukaryota  
NCBI Phylum
Basidiomycota  
NCBI Class
Agaricomycetes  
NCBI Order
Corticiales  
NCBI Family
Corticiaceae  
NCBI Genus
Phanerochaete  
NCBI Species
Phanerochaete chrysosporium  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 715956
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms Cellulose degrader
Lignin degrader
Phenotypes
  
Energy Sources