PROJECT NAME
GOLD Project ID
Gp0005744  
Project Name
Psychrobacter sp. 1501  
Other Names
  
Legacy ER Project ID
16179  
Legacy ER ID
16179  
Legacy GOLD ID
Gi05604  
NCBI BioProject Name Psychrobacter sp. 1501(2011)
NCBI BioProject ID 65121
NCBI BioProject Accession
PRJNA65121  
NCBI Locus Tag
HMPREF9373  
NCBI Biosample ID SAMN00259686
PI BCM-HGSC
Added By Konstantinos Liolios on 2009-11-18
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Psychrobacter sp. 1501
Analysis Projects Psychrobacter sp. 1501
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
183844  
Read Size
  
Sequencing Depth
27.08x  
Vector
  
GC Percent
41  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
Organism Name Psychrobacter sp. 1501
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Psychrobacter  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
1501  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-332  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1002339
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Moraxellaceae  
NCBI Genus
Psychrobacter  
NCBI Species
Psychrobacter sp. 1501(2011)  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Psychrophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Marine
Permafrost sediment
Soil
Metabolisms
  
Phenotypes Radiation resistant
Energy Sources
  
HMP METADATA
HMP ID
9373  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Blood  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-10-22  
Date Sequencing Begins
2010-12-06  
Date Draft Sequencing Completed
2011-02-13  
Cross Reference ID