PROJECT NAME
GOLD Project ID
Gp0005622  
Project Name
Selenomonas sp. oral taxon 149 67H29BP  
Other Names
  
Legacy ER Project ID
15584  
Legacy ER ID
15584  
Legacy GOLD ID
Gi05035  
NCBI BioProject Name Selenomonas sp. oral taxon 149 str. 67H29BP
NCBI BioProject ID 50535
NCBI BioProject Accession
PRJNA50535  
NCBI Locus Tag
HMPREF9166  
NCBI Biosample ID SAMN02299442
PI BCM-HGSC
Added By Nikos Kyrpides on 2009-08-24
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Selenomonas sp. oral taxon 149 67H29BP
Analysis Projects Selenomonas sp. oral taxon 149 67H29BP
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
509780  
Read Size
  
Sequencing Depth
64.6x  
Vector
  
GC Percent
57  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
Organism Name Selenomonas sp. oral taxon 149 67H29BP
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Selenomonas  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
67H29BP  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-327  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 864563
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Selenomonadales  
NCBI Family
Veillonellaceae  
NCBI Genus
Selenomonas  
NCBI Species
Selenomonas sp. oral taxon 149  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Crescent-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9166  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2010-04-16  
Date Draft Sequencing Completed
2010-06-07  
Cross Reference ID
HOMD: tax_149