PROJECT NAME
GOLD Project ID
Gp0000536  
Project Name
Thalassiosira pseudonana CCMP 1335  
Other Names
Thalassiosira pseudonana CCMP 1335  
Legacy ER Project ID
10463  
Legacy ER ID
10463  
Legacy GOLD ID
Gc00223  
NCBI BioProject Name Thalassiosira pseudonana CCMP1335
NCBI BioProject ID 191
NCBI BioProject Accession
PRJNA191  
NCBI Locus Tag
THAPS  
NCBI Biosample ID SAMN02744045
PI Armbrust, E. Virginia
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Dinos auto script on 2014-05-05
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance ALGAE
Carbon cycle
Environmental
Sequencing Center DOE Joint Genome Institute (USA)
Collaborating Institute Univ of Washington (USA)
Funding Agency DOE (USA)
Project Description
The Joint Genome Institute has sequenced this diatom to an estimated 14 fold depth  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications "Science (New York, N.Y.)" "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Eukaryotes 2002
Biosamples Thalassiosira pseudonana CCMP 1335
Analysis Projects Thalassiosira pseudonana CCMP 1335
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
3kb, 7kb, 36 kb  
Number Of Reads
  
Read Size
  
Sequencing Depth
14x  
Vector
  
GC Percent
47  
Chromosome Count
24  
Plasmid Count
0  
ORGANISM NAME
Organism Name Thalassiosira pseudonana CCMP 1335
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-BACILLARIOPHYTA  
Genus
Thalassiosira  
Genus Synonyms
  
Species
pseudonana  
Species Synonyms
  
Strain
CCMP 1335  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCMP 1335  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 296543
NCBI Kingdom
Eukaryota  
NCBI Phylum
Bacillariophyta  
NCBI Class
Coscinodiscophyceae  
NCBI Order
  
NCBI Family
Thalassiosiraceae  
NCBI Genus
Thalassiosira  
NCBI Species
Thalassiosira pseudonana  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Neritic zone  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 527168
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
4 - 5 um  
Cell Length
4 - 6 um  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Marine
Metabolisms
  
Phenotypes Carbon sequestration
Energy Sources Photosynthetic