PROJECT NAME
GOLD Project ID
Gp0005287  
Project Name
Propionibacterium avidum ATCC 25577  
Other Names
  
Legacy ER Project ID
15571  
Legacy ER ID
15571  
Legacy GOLD ID
Gi05022  
NCBI BioProject Name Propionibacterium avidum ATCC 25577
NCBI BioProject ID 64741
NCBI BioProject Accession
PRJNA64741  
NCBI Locus Tag
HMPREF9153  
NCBI Biosample ID SAMN02299449
PI BCM-HGSC
Added By Nikos Kyrpides on 2009-08-23
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Propionibacterium avidum ATCC 25577
Analysis Projects Propionibacterium avidum ATCC 25577
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
257013  
Read Size
  
Sequencing Depth
28.83x  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Propionibacterium avidum ATCC 25577
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Propionibacterium  
Genus Synonyms
  
Species
avidum  
Species Synonyms
  
Strain
ATCC 25577  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 25577  
Type Strain
  
Exemplar DOI
10.1601/ex.6616  
Exemplar Name
Propionibacterium avidum  
Taxon DOI
10.1601/tx.6616  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 997355
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Propionibacteriaceae  
NCBI Genus
Propionibacterium  
NCBI Species
Propionibacterium avidum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ003055
Synonym List Propionibacterium avidum ATCC 25577
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
7  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Abscesses
Bacteremia
Osteomyelitis
Known Habitats Host
Human
Human abscess
Human skin
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
9153  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
5. annotation (and sequence) submitted to NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2011-03-10  
Date Sequencing Begins
2011-03-10  
Date Draft Sequencing Completed
2011-04-11  
Cross Reference ID
HOMD: tax_552