PROJECT NAME
GOLD Project ID
Gp0005256  
Project Name
Centipeda periodontii DSM 2778  
Other Names
  
Legacy ER Project ID
15499  
Legacy ER ID
15499  
Legacy GOLD ID
Gi04948  
NCBI BioProject Name Centipeda periodontii DSM 2778
NCBI BioProject ID 53025
NCBI BioProject Accession
PRJNA53025  
NCBI Locus Tag
HMPREF9081  
NCBI Biosample ID SAMN00259653
Added By Nikos Kyrpides on 2009-08-22
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Centipeda periodontii DSM 2778
Analysis Projects Centipeda periodontii DSM 2778
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
284588  
Read Size
  
Sequencing Depth
38.34x  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Centipeda periodontii DSM 2778
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Centipeda  
Genus Synonyms
  
Species
periodontii  
Species Synonyms
  
Strain
DSM 2778  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 2778  
Type Strain
  
Exemplar DOI
10.1601/ex.4392  
Exemplar Name
Centipeda periodontii  
Taxon DOI
10.1601/tx.4392  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 888060
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Selenomonadales  
NCBI Family
Veillonellaceae  
NCBI Genus
Centipeda  
NCBI Species
Centipeda periodontii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ010963
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9081  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Periodontal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-12-21  
Date Sequencing Begins
2011-02-07  
Date Draft Sequencing Completed
2011-03-18  
Cross Reference ID
HOMD: tax_726