PROJECT NAME
GOLD Project ID
Gp0005229  
Project Name
Actinomyces sp. oral taxon 448 F0400  
Other Names
  
Legacy ER Project ID
15480  
Legacy ER ID
15480  
Legacy GOLD ID
Gi04929  
NCBI BioProject Name Actinomyces sp. oral taxon 448 str. F0400
NCBI BioProject ID 53017
NCBI BioProject Accession
PRJNA53017  
NCBI Locus Tag
HMPREF9062  
NCBI Biosample ID SAMN02299443
PI BCM-HGSC
Added By Nikos Kyrpides on 2009-08-22
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Actinomyces sp. oral taxon 448 F0400
Analysis Projects Actinomyces sp. oral taxon 448 F0400
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
  
Read Size
  
Sequencing Depth
32.58x  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Actinomyces sp. oral taxon 448 F0400
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinomyces  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
F0400  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-330  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 888056
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Actinomycetaceae  
NCBI Genus
Actinomyces  
NCBI Species
Actinomyces sp. oral taxon 448  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9062  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2011-03-24  
Date Draft Sequencing Completed
2011-04-26  
Cross Reference ID
HOMD: tax_448