PROJECT NAME
GOLD Project ID
Gp0005035  
Project Name
Streptococcus parasanguinis ATCC 15912  
Other Names
  
Legacy ER Project ID
14716  
Legacy ER ID
14716  
Legacy GOLD ID
Gi04201, Gc01842  
NCBI BioProject Name Streptococcus parasanguinis ATCC 15912
NCBI BioProject ID 48315
NCBI BioProject Accession
PRJNA48315  
NCBI Locus Tag
HMPREF0833  
NCBI Biosample ID SAMN00113608
PI BCM-HGSC
Added By Nikos Kyrpides on 2009-04-03
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Streptococcus parasanguinis ATCC 15912
Analysis Projects Streptococcus parasanguinis ATCC 15912
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology 454
Library Method
  
Number Of Reads
222720  
Read Size
  
Sequencing Depth
34x  
Vector
  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
Organism Name Streptococcus parasanguinis ATCC 15912
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Streptococcus  
Genus Synonyms
  
Species
parasanguinis  
Species Synonyms
  
Strain
ATCC 15912  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 15912  
Type Strain
  
Exemplar DOI
10.1601/ex.5668  
Exemplar Name
Streptococcus parasanguinis  
Taxon DOI
10.1601/tx.5668  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 760570
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Streptococcaceae  
NCBI Genus
Streptococcus  
NCBI Species
Streptococcus parasanguinis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Nasopharyngeal  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF003933
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
833  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2009-12-22  
Date Draft Sequencing Completed
2009-12-22  
Cross Reference ID
HOMD: tax_721