PROJECT NAME
GOLD Project ID
Gp0000490  
Project Name
Entamoeba histolytica HM-1:IMSS  
Other Names
  
Legacy ER Project ID
10426  
Legacy ER ID
10426  
Legacy GOLD ID
Gc00259, Gi0010426  
NCBI BioProject Name Entamoeba histolytica HM-1:IMSS
NCBI BioProject ID 142
NCBI BioProject Accession
PRJNA142  
NCBI Locus Tag
EHI  
NCBI Biosample ID
PI Loftus B
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jakob Jansson on 2010-09-15
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Pathogen
Medical
Sequencing Center J. Craig Venter Institute (USA)
Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency NIH-NIAID (USA)
Project Description
Genome sequencing project of Entamoeba histolytica was completed by a collaboration between JCVI (TIGR) and the Sanger Institute  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HomePage
Review
Wikipedia
Database
  
Genome Publications Nature The genome of the protist parasite Entamoeba histolytica.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Entamoeba histolytica HM-1:IMSS
Biosamples Entamoeba histolytica HM-1:IMSS
Analysis Projects Entamoeba histolytica HM-1:IMSS
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
1.5-2.0 kb, 2.5 kb, 8-10 kb, 10 kb  
Number Of Reads
  
Read Size
  
Sequencing Depth
12.5x  
Vector
pUC18, pHOS2  
GC Percent
24  
Chromosome Count
14  
Plasmid Count
0  
ORGANISM NAME
Organism Name Entamoeba histolytica HM-1:IMSS
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-ENTAMOEBIDAE  
Genus
Entamoeba  
Genus Synonyms
  
Species
histolytica  
Species Synonyms
  
Strain
HM-1:IMSS  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 30459  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 294381
NCBI Kingdom
Eukaryota  
NCBI Phylum
  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
Entamoeba  
NCBI Species
Entamoeba histolytica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 681606
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Amoebiasis
Known Habitats Host
Metabolisms
  
Phenotypes Parasite
Pathogen
Energy Sources