PROJECT NAME
GOLD Project ID
Gp0004767  
Project Name
Capnocytophaga ochracea F0287  
Other Names
  
Legacy ER Project ID
14381  
Legacy ER ID
14381  
Legacy GOLD ID
Gi03877  
NCBI BioProject Name Capnocytophaga ochracea F0287
NCBI BioProject ID 51493
NCBI BioProject Accession
PRJNA51493  
NCBI Locus Tag
HMPREF1977  
NCBI Biosample ID SAMN00215988
Added By Heather Creasy on 2009-01-11
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Capnocytophaga ochracea F0287
Analysis Projects Capnocytophaga ochracea F0287
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
277447  
Read Size
  
Sequencing Depth
34.5x  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Capnocytophaga ochracea F0287
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Capnocytophaga  
Genus Synonyms
  
Species
ochracea  
Species Synonyms
  
Strain
F0287  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-15  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 873517
NCBI Kingdom
Bacteria  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Capnocytophaga  
NCBI Species
Capnocytophaga ochracea  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
35 - 37  
Salinity
  
pH
  
Cell Diameter
0.42 - 0.6 um  
Cell Length
2.5 - 5.7um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Opportunistic infection
Periodontal infection
Known Habitats Host
Metabolisms
  
Phenotypes Opportunistic Pathogen
Energy Sources Chemoorganotroph
HMP METADATA
HMP ID
1977  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Izard  
Project Comments
DNA degraded  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2010-08-05  
Date Draft Sequencing Completed
2010-08-05  
Cross Reference ID
HOMD: tax_700