PROJECT NAME
GOLD Project ID
Gp0000474  
Project Name
Danio rerio Tuebingen  
Other Names
  
Legacy ER Project ID
10413  
Legacy ER ID
10413  
Legacy GOLD ID
Gc00272  
NCBI BioProject Name Danio rerio Tuebingen
NCBI BioProject ID 11776
NCBI BioProject Accession
PRJNA11776  
NCBI Locus Tag
  
NCBI Biosample ID
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Ioanna Pagani on 2011-01-28
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance
  
Sequencing Center Sanger Institute (International)
Washington University in St. Louis (International)
Collaborating Institute
  
Funding Agency NIH (International)
Project Description
Genome sequence for Danio rerio (zebrafish)  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information FishBase
ZFIN
Wikipedia
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Danio rerio Tuebingen
Biosamples Danio rerio Tuebingen
Analysis Projects Danio rerio Tuebingen
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
  
Vector
  
GC Percent
36  
Chromosome Count
25  
Plasmid Count
0  
ORGANISM NAME
Organism Name Danio rerio Tuebingen
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Danio  
Genus Synonyms
  
Species
rerio  
Species Synonyms
  
Strain
Tuebingen  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 7955
NCBI Kingdom
Eukaryota  
NCBI Phylum
Chordata  
NCBI Class
Actinopterygii  
NCBI Order
Cypriniformes  
NCBI Family
Cyprinidae  
NCBI Genus
Danio  
NCBI Species
Danio rerio  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources