PROJECT NAME
GOLD Project ID
Gp0004646  
Project Name
Prevotella buccae ATCC 33574  
Other Names
  
Legacy ER Project ID
14305  
Legacy ER ID
14305  
Legacy GOLD ID
Gi03787  
NCBI BioProject Name Prevotella buccae ATCC 33574
NCBI BioProject ID 51491
NCBI BioProject Accession
PRJNA51491  
NCBI Locus Tag
HMPREF6485  
NCBI Biosample ID SAMN00216833
PI BCM-HGSC
Added By Heather Creasy on 2009-01-04
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Prevotella buccae ATCC 33574
Analysis Projects Prevotella buccae ATCC 33574
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
303329  
Read Size
  
Sequencing Depth
32.2x  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Prevotella buccae ATCC 33574
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Prevotella  
Genus Synonyms
  
Species
buccae  
Species Synonyms
  
Strain
ATCC 33574  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33574  
Type Strain
  
Exemplar DOI
10.1601/ex.7937  
Exemplar Name
Prevotella buccae  
Taxon DOI
10.1601/tx.8048  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 873513
NCBI Kingdom
Bacteria  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Prevotellaceae  
NCBI Genus
Prevotella  
NCBI Species
Prevotella buccae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L16477
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
6485  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Gingival crevices  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Jacques Izard  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2010-07-14  
Date Draft Sequencing Completed
2010-08-05  
Cross Reference ID
HOMD: tax_560