PROJECT NAME
GOLD Project ID
Gp0004592  
Project Name
Rothia dentocariosa ATCC 17931  
Other Names
  
Legacy ER Project ID
14211  
Legacy ER ID
14211  
Legacy GOLD ID
Gi03689, Gc01662  
NCBI BioProject Name Rothia dentocariosa ATCC 17931
NCBI BioProject ID 48447
NCBI BioProject Accession
PRJNA48447  
NCBI Locus Tag
HMPREF0733  
NCBI Biosample ID SAMN00120582
Added By Heather Creasy on 2008-12-21
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Rothia dentocariosa ATCC 17931
Analysis Projects Rothia dentocariosa ATCC 17931
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology 454
Library Method
  
Number Of Reads
255039  
Read Size
  
Sequencing Depth
34.7x  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
Organism Name Rothia dentocariosa ATCC 17931
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Rothia  
Genus Synonyms
  
Species
dentocariosa  
Species Synonyms
  
Strain
ATCC 17931  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 17931  
Type Strain
  
Exemplar DOI
10.1601/ex.5900  
Exemplar Name
Rothia dentocariosa  
Taxon DOI
10.1601/tx.5900  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 762948
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Micrococcaceae  
NCBI Genus
Rothia  
NCBI Species
Rothia dentocariosa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M59055
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Endocarditis
Meningitis
Opportunistic infection
Periodontitis
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
733  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Teeth  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
ATCC  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2009-12-01  
Date Draft Sequencing Completed
2009-12-23  
Cross Reference ID
HOMD: tax_587