PROJECT NAME
GOLD Project ID
Gp0004548  
Project Name
Escherichia coli 83972  
Other Names
  
Legacy ER Project ID
14246  
Legacy ER ID
14246  
Legacy GOLD ID
Gi03725  
NCBI BioProject Name Escherichia coli 83972
NCBI BioProject ID 31467
NCBI BioProject Accession
PRJNA31467  
NCBI Locus Tag
HMPREF0358  
NCBI Biosample ID SAMN00001495
PI BCM-HGSC
Added By Heather Creasy on 2008-12-22
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Comparative analysis
Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
HMP
Entrez
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Escherichia coli 83972
Analysis Projects Escherichia coli 83972
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 5: Non-contiguous Finished
Finishing Goal Level 5: Non-contiguous Finished
Sequencing Comments
  
Sequencing Technology 454
Illumina
Sanger
Library Method
  
Number Of Reads
796590  
Read Size
  
Sequencing Depth
30.16x  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Escherichia coli 83972
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Escherichia  
Genus Synonyms
  
Species
coli  
Species Synonyms
  
Strain
83972  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-50  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 525281
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Escherichia  
NCBI Species
Escherichia coli  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Host
Human intestinal microflora
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
358  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Urinary tract  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Richard Hull  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2007-12-17  
Date Draft Sequencing Completed
2007-12-17  
Cross Reference ID
HOMD: tax_574