PROJECT NAME
GOLD Project ID
Gp0044809  
Project Name
Mycobacterium tuberculosis PanR0307  
Other Names
  
Legacy ER Project ID
51803  
Legacy ER ID
51803  
Legacy GOLD ID
Gi0051803  
NCBI BioProject Name Mycobacterium tuberculosis PanR0307
NCBI BioProject ID 208577
NCBI BioProject Accession
PRJNA208577  
NCBI Locus Tag
M539  
NCBI Biosample ID SAMN02471080
PI
  
Added By Dinos auto script on 2013-07-30
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Medical
Sequencing Center Texas A&M University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of clinical microbiology 51(10):3277-85 Multidrug-resistant tuberculosis in panama is driven by clonal expansion of a multidrug-resistant Mycobacterium tuberculosis strain related to the KZN extensively drug-resistant M. tuberculosis strain from South Africa.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Mycobacterium tuberculosis (MDR strains from Panama) Genome sequencing
Biosamples Mycobacterium tuberculosis PanR0307
Analysis Projects Mycobacterium tuberculosis PanR0307
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Illumina GAIIx
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
111.0x  
Vector
  
GC Percent
66  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
Organism Name Mycobacterium tuberculosis PanR0307
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Mycobacterium  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
PanR0307  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1346784
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycobacterium  
NCBI Species
Mycobacterium tuberculosis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources