PROJECT NAME
GOLD Project ID
Gp0004465  
Project Name
Sphingobacterium spiritivorum ATCC 33861  
Other Names
  
Legacy ER Project ID
14227  
Legacy ER ID
14227  
Legacy GOLD ID
Gi03705  
NCBI BioProject Name Sphingobacterium spiritivorum ATCC 33861
NCBI BioProject ID 31531
NCBI BioProject Accession
PRJNA31531  
NCBI Locus Tag
HMPREF0766  
NCBI Biosample ID SAMN00001488
Added By Heather Creasy on 2008-12-21
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Sphingobacterium spiritivorum ATCC 33861
Analysis Projects Sphingobacterium spiritivorum ATCC 33861
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Library Method
  
Number Of Reads
787893  
Read Size
  
Sequencing Depth
28.49x  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Sphingobacterium spiritivorum ATCC 33861
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Sphingobacterium  
Genus Synonyms
Flavobacterium  
Species
spiritivorum  
Species Synonyms
  
Strain
ATCC 33861  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33861  
Type Strain
  
Exemplar DOI
10.1601/ex.8114  
Exemplar Name
Sphingobacterium spiritivorum  
Taxon DOI
10.1601/tx.8224  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 525373
NCBI Kingdom
Bacteria  
NCBI Phylum
Bacteroidetes  
NCBI Class
Sphingobacteriia  
NCBI Order
Sphingobacteriales  
NCBI Family
Sphingobacteriaceae  
NCBI Genus
Sphingobacterium  
NCBI Species
Sphingobacterium spiritivorum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M58778
Synonym List Sphingobacterium spiritivorum ATCC 33861
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
766  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Vaginal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
ATCC  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2007-08-01  
Date Draft Sequencing Completed
2007-08-01  
Cross Reference ID