PROJECT NAME
GOLD Project ID
Gp0004458  
Project Name
Fusobacterium sp. D11  
Other Names
  
Legacy ER Project ID
14208  
Legacy ER ID
14208  
Legacy GOLD ID
Gi03685  
NCBI BioProject Name Fusobacterium sp. D11
NCBI BioProject ID 32501
NCBI BioProject Accession
PRJNA32501  
NCBI Locus Tag
PSAG  
NCBI Biosample ID SAMN02463718
PI Birren, B
Added By Heather Creasy on 2008-12-21
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Comparative analysis
Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Fusobacterium sp. D11
Analysis Projects Fusobacterium sp. D11
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
  
Number Of Reads
291679  
Read Size
  
Sequencing Depth
17.22x  
Vector
  
GC Percent
27  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Fusobacterium sp. D11
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FUSOBACTERIA  
Genus
Fusobacterium  
Genus Synonyms
  
Species
sp.  
Species Synonyms
  
Strain
D11  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-75  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 556264
NCBI Kingdom
Bacteria  
NCBI Phylum
Fusobacteria  
NCBI Class
Fusobacteriia  
NCBI Order
Fusobacteriales  
NCBI Family
Fusobacteriaceae  
NCBI Genus
Fusobacterium  
NCBI Species
Fusobacterium sp. D11  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Opportunistic infection
Known Habitats Host
Human skin
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
679  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2009-03-06  
Date Sequencing Begins
2009-03-06  
Date Draft Sequencing Completed
2009-07-08  
Cross Reference ID