PROJECT NAME
GOLD Project ID
Gp0004153  
Project Name
Actinobacillus ureae ATCC 25976  
Other Names
  
Legacy ER Project ID
14088  
Legacy ER ID
14088  
Legacy GOLD ID
Gi03558  
NCBI BioProject Name Actinobacillus ureae ATCC 25976
NCBI BioProject ID 52977
NCBI BioProject Accession
PRJNA52977  
NCBI Locus Tag
HMPREF0027  
NCBI Biosample ID SAMN00253301
Added By Heather Creasy on 2008-11-07
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Baylor College of Medicine
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Actinobacillus ureae ATCC 25976
Analysis Projects Actinobacillus ureae ATCC 25976
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
249135  
Read Size
  
Sequencing Depth
36.2x  
Vector
  
GC Percent
40  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Actinobacillus ureae ATCC 25976
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Actinobacillus  
Genus Synonyms
  
Species
ureae  
Species Synonyms
  
Strain
ATCC 25976  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 25976  
Type Strain
  
Exemplar DOI
10.1601/ex.3394  
Exemplar Name
Actinobacillus ureae  
Taxon DOI
10.1601/tx.3415  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 887324
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pasteurellales  
NCBI Family
Pasteurellaceae  
NCBI Genus
Actinobacillus  
NCBI Species
Actinobacillus ureae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M75075
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Singles
Diseases
  
Known Habitats Host
Human airways
Respiratory tract
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
27  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Airways  
HMP Isolation Body Sample Subsite
Nasal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
ATCC  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2010-10-08  
Date Draft Sequencing Completed
2010-11-16  
Cross Reference ID