PROJECT NAME
GOLD Project ID
Gp0041526  
Project Name
Pseudomonas aeruginosa VRFPA02  
Other Names
  
Legacy ER Project ID
47860  
Legacy ER ID
47860  
Legacy GOLD ID
Gi0047860  
NCBI BioProject Name Pseudomonas aeruginosa VRFPA02
NCBI BioProject ID 196397
NCBI BioProject Accession
PRJNA196397  
NCBI Locus Tag
  
NCBI Biosample ID SAMN02472102
PI Jambulingam Malathi
Added By Dinos auto script on 2013-05-14
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency
  
Project Description
  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequence of Multidrug-Resistant Pseudomonas aeruginosa Strain VRFPA02, Isolated from a Septicemic Patient in India.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Pseudomonas aeruginosa VRFPA02 Genome sequencing
Biosamples Pseudomonas aeruginosa VRFPA02
Analysis Projects Pseudomonas aeruginosa VRFPA02
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Ion Torrent
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
50x  
Vector
  
GC Percent
66  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Pseudomonas aeruginosa VRFPA02
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
aeruginosa  
Species Synonyms
  
Strain
VRFPA02  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1315978
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas aeruginosa  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types