PROJECT NAME
GOLD Project ID
Gp0004099  
Project Name
Fusobacterium periodonticum D10  
Other Names
  
Legacy ER Project ID
13953  
Legacy ER ID
13953  
Legacy GOLD ID
Gi03434  
NCBI BioProject Name Fusobacterium periodonticum D10
NCBI BioProject ID 34699
NCBI BioProject Accession
PRJNA34699  
NCBI Locus Tag
HMPREF0399  
NCBI Biosample ID SAMN02463721
PI Birren, B
Added By Heather Creasy on 2008-09-14
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference strain for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
HMP
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Fusobacterium periodonticum D10
Analysis Projects Fusobacterium periodonticum D10
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
  
Number Of Reads
176799  
Read Size
  
Sequencing Depth
13x  
Vector
  
GC Percent
28  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Fusobacterium periodonticum D10
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FUSOBACTERIA  
Genus
Fusobacterium  
Genus Synonyms
  
Species
periodonticum  
Species Synonyms
  
Strain
D10  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-41  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 620833
NCBI Kingdom
Bacteria  
NCBI Phylum
Fusobacteria  
NCBI Class
Fusobacteriia  
NCBI Order
Fusobacteriales  
NCBI Family
Fusobacteriaceae  
NCBI Genus
Fusobacterium  
NCBI Species
Fusobacterium periodonticum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Filament-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
HMP METADATA
HMP ID
399  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
5. annotation (and sequence) submitted to NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2009-01-01  
Date Sequencing Begins
2009-01-01  
Date Draft Sequencing Completed
2009-03-01  
Cross Reference ID
HOMD: tax_201