PROJECT NAME
GOLD Project ID
Gp0004094  
Project Name
Melanochromis auratus  
Other Names
Melanochromis auratus  
Legacy ER Project ID
179  
Legacy ER ID
179  
Legacy GOLD ID
Gi03369  
NCBI BioProject Name Melanochromis auratus
NCBI BioProject ID 29481
NCBI BioProject Accession
PRJNA29481  
NCBI Locus Tag
MAUR  
NCBI Biosample ID SAMN02743803
PI Kocher, Thomas D.
Added By Nikos Kyrpides on 2008-09-07
Last Modified By Jakob Jansson on 2010-12-17
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (USA)
Collaborating Institute Georgia Institute of Technology (USA)
Funding Agency DOE (USA)
Project Description
Melanochromis auratus  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
DOE Joint Genome Institute
Publication
Database
  
Genome Publications Genome biology 9(7):R113 Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Metriaclima zebra
Biosamples Melanochromis auratus
Analysis Projects Melanochromis auratus
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
0.12x  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Melanochromis auratus
Other names (alias, synonyms, short names, common names)
  
Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Melanochromis  
Genus Synonyms
  
Species
auratus  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 27751
NCBI Kingdom
Eukaryota  
NCBI Phylum
Chordata  
NCBI Class
Actinopterygii  
NCBI Order
Perciformes  
NCBI Family
Cichlidae  
NCBI Genus
Melanochromis  
NCBI Species
Melanochromis auratus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources