PROJECT NAME
GOLD Project ID
Gp0004080  
Project Name
Capnocytophaga sputigena Capno, ATCC 33612  
Other Names
  
Legacy ER Project ID
13881  
Legacy ER ID
13881  
Legacy GOLD ID
Gi03356  
NCBI BioProject Name Capnocytophaga sputigena ATCC 33612
NCBI BioProject ID 30997
NCBI BioProject Accession
PRJNA30997  
NCBI Locus Tag
CAPSP0001  
NCBI Biosample ID SAMN00000681
PI Dodson R.
Added By Heather Creasy on 2008-09-06
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Human Pathogen
Medical
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Capnocytophaga sputigena Capno, ATCC 33612
Analysis Projects Capnocytophaga sputigena Capno, ATCC 33612
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Library Method
  
Number Of Reads
229445  
Read Size
  
Sequencing Depth
19x  
Vector
  
GC Percent
38  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Capnocytophaga sputigena Capno, ATCC 33612
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Capnocytophaga  
Genus Synonyms
  
Species
sputigena  
Species Synonyms
  
Strain
Capno, ATCC 33612  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33612  
Type Strain
  
Exemplar DOI
10.1601/ex.8140  
Exemplar Name
Capnocytophaga sputigena  
Taxon DOI
10.1601/tx.8140  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553177
NCBI Kingdom
Bacteria  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Capnocytophaga  
NCBI Species
Capnocytophaga sputigena  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L14636
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Periodontitis
Known Habitats Gingival crevices
Host
Human oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph
HMP METADATA
HMP ID
197  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Gingival crevices  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
2008-03-25  
Cross Reference ID
HOMD: tax_775