PROJECT NAME
GOLD Project ID
Gp0004050  
Project Name
Achromobacter piechaudii ATCC 43553  
Other Names
  
Legacy ER Project ID
14084  
Legacy ER ID
14084  
Legacy GOLD ID
Gi03555  
NCBI BioProject Name Achromobacter piechaudii ATCC 43553
NCBI BioProject ID 46343
NCBI BioProject Accession
PRJNA46343  
NCBI Locus Tag
HMPREF0004  
NCBI Biosample ID SAMN00120564
Added By Heather Creasy on 2008-11-06
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Achromobacter piechaudii ATCC 43553
Analysis Projects Achromobacter piechaudii ATCC 43553
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
  
Number Of Reads
429741  
Read Size
  
Sequencing Depth
26.2x  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Achromobacter piechaudii ATCC 43553
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Achromobacter  
Genus Synonyms
  
Species
piechaudii  
Species Synonyms
  
Strain
ATCC 43553  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 43553  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 742159
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Alcaligenaceae  
NCBI Genus
Achromobacter  
NCBI Species
Achromobacter piechaudii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human airways
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
4  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Airways  
HMP Isolation Body Sample Subsite
Nasal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
ATCC  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2009-12-21  
Date Draft Sequencing Completed
2009-12-23  
Cross Reference ID