PROJECT NAME
GOLD Project ID
Gp0003993  
Project Name
Atopobium rimae ATCC 49626  
Other Names
  
Legacy ER Project ID
13880  
Legacy ER ID
13880  
Legacy GOLD ID
Gi03355  
NCBI BioProject Name Atopobium rimae ATCC 49626
NCBI BioProject ID 30999
NCBI BioProject Accession
PRJNA30999  
NCBI Locus Tag
HMPREF0086  
NCBI Biosample ID SAMN00000717
PI Dodson R.
Added By Heather Creasy on 2008-09-06
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Human Pathogen
Medical
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Atopobium rimae ATCC 49626
Analysis Projects Atopobium rimae ATCC 49626
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
294398  
Read Size
  
Sequencing Depth
10-20x  
Vector
  
GC Percent
49  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Atopobium rimae ATCC 49626
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Atopobium  
Genus Synonyms
  
Species
rimae  
Species Synonyms
  
Strain
ATCC 49626  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 49626  
Type Strain
  
Exemplar DOI
10.1601/ex.5425  
Exemplar Name
Atopobium rimae  
Taxon DOI
10.1601/tx.5743  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553184
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Coriobacteriales  
NCBI Family
Coriobacteriaceae  
NCBI Genus
Atopobium  
NCBI Species
Atopobium rimae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF292371
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Peritonitis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
HMP METADATA
HMP ID
86  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-05-28  
Date Sequencing Begins
  
Date Draft Sequencing Completed
2008-08-08  
Cross Reference ID
HOMD: tax_750