PROJECT NAME
GOLD Project ID
Gp0003989  
Project Name
Campylobacter rectus RM3267, CCUG 20446  
Other Names
  
Legacy ER Project ID
13875  
Legacy ER ID
13875  
Legacy GOLD ID
Gi03349  
NCBI BioProject Name Campylobacter rectus RM3267
NCBI BioProject ID 31017
NCBI BioProject Accession
PRJNA31017  
NCBI Locus Tag
CAMRE  
NCBI Biosample ID SAMN00000716
PI Dodson R.
Added By Heather Creasy on 2008-09-06
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Campylobacter rectus RM3267, CCUG 20446
Analysis Projects Campylobacter rectus RM3267, CCUG 20446
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
219864  
Read Size
  
Sequencing Depth
26x  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Campylobacter rectus RM3267, CCUG 20446
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Campylobacter  
Genus Synonyms
  
Species
rectus  
Species Synonyms
  
Strain
RM3267, CCUG 20446  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCUG 20446  
Type Strain
  
Exemplar DOI
10.1601/ex.3863  
Exemplar Name
Campylobacter rectus  
Taxon DOI
10.1601/tx.3811  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553218
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Campylobacteraceae  
NCBI Genus
Campylobacter  
NCBI Species
Campylobacter rectus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L04317
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Singles
Diseases Periodontitis
Known Habitats Gingival crevices
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
HMP METADATA
HMP ID
192  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Gingival crevices  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-02-13  
Date Sequencing Begins
  
Date Draft Sequencing Completed
2008-06-30  
Cross Reference ID
HOMD: tax_748