PROJECT NAME
GOLD Project ID
Gp0003877  
Project Name
Eikenella corrodens ATCC 23834  
Other Names
  
Legacy ER Project ID
13777  
Legacy ER ID
13777  
Legacy GOLD ID
Gi03252  
NCBI BioProject Name Eikenella corrodens ATCC 23834
NCBI BioProject ID 30493
NCBI BioProject Accession
PRJNA30493  
NCBI Locus Tag
EIKCOROL  
NCBI Biosample ID SAMN00008822
PI Fulton L
Added By Heather Creasy on 2008-07-10
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Comparative analysis
Human Microbiome Project (HMP)
Human Pathogen
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
HMP
Entrez
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Eikenella corrodens ATCC 23834
Analysis Projects Eikenella corrodens ATCC 23834
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
36.1x  
Vector
  
GC Percent
56  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Eikenella corrodens ATCC 23834
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Eikenella  
Genus Synonyms
  
Species
corrodens  
Species Synonyms
  
Strain
ATCC 23834  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 23834  
Type Strain
  
Exemplar DOI
10.1601/ex.1962  
Exemplar Name
Eikenella corrodens  
Taxon DOI
10.1601/tx.1962  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 546274
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Neisseriales  
NCBI Family
Neisseriaceae  
NCBI Genus
Eikenella  
NCBI Species
Eikenella corrodens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M22512
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
35-37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Periodontitis
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph
HMP METADATA
HMP ID
335  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-05-01  
Date Sequencing Begins
2008-12-12  
Date Draft Sequencing Completed
2009-01-08  
Cross Reference ID
HOMD: tax_577