PROJECT NAME
GOLD Project ID
Gp0003842  
Project Name
Yersinia rohdei ATCC 43380  
Other Names
  
Legacy ER Project ID
13677  
Legacy ER ID
13677  
Legacy GOLD ID
Gi03159  
NCBI BioProject Name Yersinia rohdei ATCC 43380
NCBI BioProject ID 29767
NCBI BioProject Accession
PRJNA29767  
NCBI Locus Tag
YROHD0001  
NCBI Biosample ID SAMN00005360
PI
  
Added By Nikos Kyrpides on 2008-06-04
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance
  
Sequencing Center Naval Medical Research Center (NMRC) (USA)
Collaborating Institute
  
Funding Agency DOD (USA)
Project Description
Isolated from dog feces  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Yersinia rohdei ATCC 43380
Biosamples Yersinia rohdei ATCC 43380
Analysis Projects Yersinia rohdei ATCC 43380
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
23.6x  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Yersinia rohdei ATCC 43380
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Yersinia  
Genus Synonyms
  
Species
rohdei  
Species Synonyms
  
Strain
ATCC 43380  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 43380  
Type Strain
  
Exemplar DOI
10.1601/ex.3365  
Exemplar Name
Yersinia rohdei  
Taxon DOI
10.1601/tx.3365  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 527004
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Yersinia  
NCBI Species
Yersinia rohdei  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF366384
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Feces
Gastrointestinal tract
Host
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources Heterotroph