PROJECT NAME
GOLD Project ID
Gp0003809  
Project Name
Borrelia garinii Far04  
Other Names
  
Legacy ER Project ID
13627  
Legacy ER ID
13627  
Legacy GOLD ID
Gi03113  
NCBI BioProject Name Borrelia garinii Far04
NCBI BioProject ID 29573
NCBI BioProject Accession
PRJNA29573  
NCBI Locus Tag
BGAFAR04  
NCBI Biosample ID SAMN02436278
PI Schutzer SE
Added By Nikos Kyrpides on 2008-05-15
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Nucleic Acid
  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Pathogen
Medical
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency NIH-NIAID (USA)
Project Description
Major causative agent of Lyme disease in Europe  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Journal of bacteriology 193(24):6995-6 Whole-genome sequences of two Borrelia afzelii and two Borrelia garinii Lyme disease agent isolates.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Borrelia garinii Far04
Biosamples Borrelia garinii Far04
Analysis Projects Borrelia garinii Far04
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology Sanger
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
12x  
Vector
  
GC Percent
28  
Chromosome Count
1  
Plasmid Count
7  
ORGANISM NAME
Organism Name Borrelia garinii Far04
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Borrelia  
Genus Synonyms
  
Species
garinii  
Species Synonyms
  
Strain
Far04  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 519049
NCBI Kingdom
Bacteria  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
Spirochaetales  
NCBI Family
Spirochaetaceae  
NCBI Genus
Borrelia  
NCBI Species
Borrelia garinii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Birds  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Lyme disease
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources