PROJECT NAME
GOLD Project ID
Gp0003707  
Project Name
Roseomonas cervicalis ATCC 49957  
Other Names
  
Legacy ER Project ID
13436  
Legacy ER ID
13436  
Legacy GOLD ID
Gi02855  
NCBI BioProject Name Roseomonas cervicalis ATCC 49957
NCBI BioProject ID 31527
NCBI BioProject Accession
PRJNA31527  
NCBI Locus Tag
HMPREF0731  
NCBI Biosample ID SAMN00001496
PI BCM-HGSC
Added By Heather Creasy on 2008-01-09
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Roseomonas cervicalis ATCC 49957
Analysis Projects Roseomonas cervicalis ATCC 49957
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
1150563  
Read Size
  
Sequencing Depth
67.1x  
Vector
  
GC Percent
72  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Roseomonas cervicalis ATCC 49957
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseomonas  
Genus Synonyms
  
Species
cervicalis  
Species Synonyms
  
Strain
E7107, ATCC 49957  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 49957  
Type Strain
  
Exemplar DOI
10.1601/ex.1603  
Exemplar Name
Roseomonas cervicalis  
Taxon DOI
10.1601/tx.1603  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 525371
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodospirillales  
NCBI Family
Acetobacteraceae  
NCBI Genus
Roseomonas  
NCBI Species
Roseomonas cervicalis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY150047
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
35  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Pairs
Diseases
  
Known Habitats Fresh water
Host
Human vaginal microflora
Metabolisms
  
Phenotypes Catalase positive
Energy Sources
  
HMP METADATA
HMP ID
731  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Vaginal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
ATCC  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2007-08-23  
Date Draft Sequencing Completed
2007-08-23  
Cross Reference ID