PROJECT NAME
GOLD Project ID
Gp0003592  
Project Name
Actinomyces urogenitalis DSM 15434  
Other Names
  
Legacy ER Project ID
13181  
Legacy ER ID
13181  
Legacy GOLD ID
Gi02602  
NCBI BioProject Name Actinomyces urogenitalis DSM 15434
NCBI BioProject ID 31429
NCBI BioProject Accession
PRJNA31429  
NCBI Locus Tag
HMPREF0058  
NCBI Biosample ID SAMN00002545
PI BCM-HGSC
Added By Heather Creasy on 2007-12-09
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
HMP
Entrez
Taxonomy
Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Actinomyces urogenitalis DSM 15434
Analysis Projects Actinomyces urogenitalis DSM 15434
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Illumina
Library Method
  
Number Of Reads
402269  
Read Size
  
Sequencing Depth
35.81x  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Actinomyces urogenitalis DSM 15434
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Actinomyces  
Genus Synonyms
  
Species
urogenitalis  
Species Synonyms
  
Strain
DSM 15434  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 15434  
Type Strain
  
Exemplar DOI
10.1601/ex.5806  
Exemplar Name
Actinomyces urogenitalis  
Taxon DOI
10.1601/tx.5806  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 525246
NCBI Kingdom
Bacteria  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Actinomycetales  
NCBI Family
Actinomycetaceae  
NCBI Genus
Actinomyces  
NCBI Species
Actinomyces urogenitalis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ243791
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Microaerophilic  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human vaginal microflora
Urogenital tract
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
58  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Vaginal  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
DSM 15434  
Project Comments
forms hyphae  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2008-11-07  
Date Draft Sequencing Completed
2008-11-07  
Cross Reference ID