PROJECT NAME
GOLD Project ID
Gp0003552  
Project Name
Pediococcus acidilactici DSM 20284  
Other Names
  
Legacy ER Project ID
13416  
Legacy ER ID
13416  
Legacy GOLD ID
Gi02835  
NCBI BioProject Name Pediococcus acidilactici DSM 20284
NCBI BioProject ID 50527
NCBI BioProject Accession
PRJNA50527  
NCBI Locus Tag
HMPREF0623  
NCBI Biosample ID SAMN00116807
PI BCM-HGSC
Added By Heather Creasy on 2008-01-03
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Pediococcus acidilactici DSM 20284
Analysis Projects Pediococcus acidilactici DSM 20284
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology 454
Library Method
454 Paired-end  
Number Of Reads
691096  
Read Size
  
Sequencing Depth
130x  
Vector
  
GC Percent
42  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
Organism Name Pediococcus acidilactici DSM 20284
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Pediococcus  
Genus Synonyms
  
Species
acidilactici  
Species Synonyms
  
Strain
DSM 20284  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 20284  
Type Strain
  
Exemplar DOI
10.1601/ex.5451  
Exemplar Name
Pediococcus acidilactici  
Taxon DOI
10.1601/tx.5451  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 862514
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Pediococcus  
NCBI Species
Pediococcus acidilactici  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M58833
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
623  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
DSMZ  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2010-03-03  
Date Draft Sequencing Completed
2010-04-19  
Cross Reference ID