PROJECT NAME
GOLD Project ID
Gp0003507  
Project Name
Enterococcus faecium DO  
Other Names
  
Legacy ER Project ID
13309  
Legacy ER ID
13309  
Legacy GOLD ID
Gi02729, Gc02314  
NCBI BioProject Name Enterococcus faecium DO
NCBI BioProject ID 30627
NCBI BioProject Accession
PRJNA30627  
NCBI Locus Tag
AUE  
NCBI Biosample ID SRS002520
Added By Heather Creasy on 2007-12-30
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Complete and Published
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications BMC microbiology 12(135):135 Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Enterococcus faecium DO
Analysis Projects Enterococcus faecium DO
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 6: Finished
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology 454-GS-FLX
Illumina
Sanger
Library Method
  
Number Of Reads
572114  
Read Size
  
Sequencing Depth
19.18x  
Vector
  
GC Percent
38  
Chromosome Count
1  
Plasmid Count
3  
ORGANISM NAME
Organism Name Enterococcus faecium DO
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Enterococcus  
Genus Synonyms
  
Species
faecium  
Species Synonyms
  
Strain
DO  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-472  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 333849
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Enterococcaceae  
NCBI Genus
Enterococcus  
NCBI Species
Enterococcus faecium  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
351  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Blood  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
ATCC  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
2007-02-16  
Date Draft Sequencing Completed
2007-02-16  
Cross Reference ID
HOMD: tax_801