PROJECT NAME
GOLD Project ID
Gp0003471  
Project Name
Helicobacter pylori HPKX_438_CA4C1  
Other Names
  
Legacy ER Project ID
13586  
Legacy ER ID
13586  
Legacy GOLD ID
Gi03001  
NCBI BioProject Name Helicobacter pylori HPKX_438_CA4C1
NCBI BioProject ID 28545
NCBI BioProject Accession
PRJNA28545  
NCBI Locus Tag
KX438CA4C1  
NCBI Biosample ID SAMN00000755
Added By Nikos Kyrpides on 2008-01-30
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Pathogen
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Isolate from a patient with gastric carcinoma  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications 18332421
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Genome sequencing of Helicobacter pylori, Washington University Medical School
Biosamples Helicobacter pylori HPKX_438_CA4C1
Analysis Projects Helicobacter pylori HPKX_438_CA4C1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality
  
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
15x  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Helicobacter pylori HPKX_438_CA4C1
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Helicobacter  
Genus Synonyms
  
Species
pylori  
Species Synonyms
  
Strain
HPKX_438_CA4C1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 499172
NCBI Kingdom
Bacteria  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Helicobacteraceae  
NCBI Genus
Helicobacter  
NCBI Species
Helicobacter pylori  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Gastric inflammation
Ulcer
Known Habitats Host
Human stomach
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types