PROJECT NAME
GOLD Project ID
Gp0003427  
Project Name
Staphylococcus capitis SK14  
Other Names
  
Legacy ER Project ID
13454  
Legacy ER ID
13454  
Legacy GOLD ID
Gi02873  
NCBI BioProject Name Staphylococcus capitis SK14
NCBI BioProject ID 31013
NCBI BioProject Accession
PRJNA31013  
NCBI Locus Tag
STACA0001  
NCBI Biosample ID SAMN00000713
Added By Heather Creasy on 2008-01-10
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid
DNA  
Sequencing Strategy Whole Genome Sequencing
PROJECT INFORMATION
Project Status Permanent Draft
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center J. Craig Venter Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
HMP
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Biosamples Staphylococcus capitis SK14
Analysis Projects Staphylococcus capitis SK14
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality Level 5: Non-contiguous Finished
Finishing Goal Level 5: Non-contiguous Finished
Sequencing Comments
  
Sequencing Technology
  
Library Method
  
Number Of Reads
  
Read Size
  
Sequencing Depth
18x  
Vector
  
GC Percent
33  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
Organism Name Staphylococcus capitis SK14
Other names (alias, synonyms, short names, common names)
  
Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Staphylococcus  
Genus Synonyms
  
Species
capitis  
Species Synonyms
  
Strain
SK14  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
BEI HM-117  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type Isolate
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 553212
NCBI Kingdom
Bacteria  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Staphylococcaceae  
NCBI Genus
Staphylococcus  
NCBI Species
Staphylococcus capitis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
Free living  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Clusters
Singles
Diseases
  
Known Habitats Host
Human skin
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
785  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Skin  
HMP Isolation Body Sample Subsite
Right arm  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
yes--NYUSOM bacterial library (2); currently at JCVI  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2008-01-15  
Date Sequencing Begins
  
Date Draft Sequencing Completed
2008-03-04  
Cross Reference ID